CBT_project/xfr_preprocess.py

24 lines
650 B
Python
Raw Normal View History

import os
from imaging.preprocessing import process_dataset
data_root = '/mnt/1220/Public/dataset/Spine/CTSpine1K/data/'
label_root = '/mnt/1220/Public/dataset/Spine/CTSpine1K/label/'
output_dir = '/mnt/1248/open2/cyrou/CBT/Seg/Resample/standardized-xfr/'
label_map = {
'colon': 'conlon',
'COVID-19': 'COVID-19',
'HNSCC-3DCT-RT_neck': 'HNSCC-3DCT-RT_neck',
'liver': 'Liver',
}
def main():
for key, value in label_map.items():
data_dir = os.path.join(data_root, key)
label_dir = os.path.join(label_root, value)
process_dataset(data_dir, label_dir, output_dir)
if __name__ == '__main__':
main()